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Keywords
PROTEIN SYNTHESIS AND FOLDING, MEMBRANE PROTEIN, ENDOPLASMIC RETICULUM, PROTEIN TRANSPORT, INTERMEDIATE COMPARTMENT, GOLGI COMPLEX, LIPID MICRODOMAINS, SIGNALING ORIGINATING FROM THE ENDOPLASMIC RETICULUM

Physiology and pathology of protein folding, trafficking and signaling in the endoplasmic reticulum

Università degli Studi di Napoli "Federico II"
Abstract
The endoplasmic reticulum (ER) is a hallmark of eukaryotic cell biology, and is responsible for numerous vital interconnected processes linked to general cell behaviors, such as response to stress and apoptosis. The goal of this project is to contribute to the definition of molecular mechanisms underlying central functions of the ER – protein folding and selection of cargo proteins for export, signaling to and from the ER -, functions that not only have a primary role in the homeostasis of the ER, the Golgi complex, and the Intermediate Compartment between ER and Golgi (IC), but are also involved in human pathologies. Moreover, in industry, the low production of human proteins of clinical utility is often caused by their inefficient transport in heterologous systems. Therefore, a better understanding of these mechanisms may have important implications for medicine and biotechnology.

Here we summarize the 4 principal lines of the project.

1. Protein folding in the ER
A central function of the ER is to assist the folding of newly synthesized proteins, hindering the inappropriate transport of malfolded proteins. In this project, we will characterize the functions of a recently identified protein involved in oxidative folding, ERp44: we will study its role in the folding and transport of IgM, of prion protein and of coagulation factors V and VIII, its localization in the ER/IC system, and its interaction with protein partners identified >>>

Principal Investigator
Stefano Bonatti Università degli Studi di NAPOLI "Federico II"
Research Objectives
The goal of this project is to contribute to the definiton of molecular mechanisms underlying fundamental functions of the Endoplasmic Reticulum (ER) and of the functional association of the ER with the Intermediate Compartment between the ER and the Golgi (IC) and the Golgi itself:

1. Folding, quality control (QC) and redox systems of the ER
2. Routes for the selective transport of proteins from and to the ER
3. Possible role of lipid microdomains in the folding and sorting of proteins in the ER
4. Signaling pathways originating in the ER

Although for explanatory purposes we have listed these functions separately, they are in fact tightly interconnected, so that they must be studied in an integrated fashion. This is the reason for coordinating 4 research groups in the present research proposal. The 4 groups have been working for many years on the ER, and have played a recognized role in the development and the promotion of cell molecular biology in Italy. Each group has developed a distinct expertise, and a specific set of experimental systems and reagents. It is hoped that a large number of novel results will be produced through direct collaboration between the groups, exchange of information and sharing of reagents and methods well before their publication. To favor such collaboration, the participants will meet twice a year: in the spring within the annual ABCD satellite meeting “Membrane Traffic and Organelle >>>

Timescale
24 months
National and international background
The Endoplasmic Reticulum (ER) is a hallmark of eukaryotic cell biology, being responsible for many processes of fundamental importance, such as 1) Biogenesis, folding, selection and transport of proteins trafficking to the distal compartments of the exocytic pathway; 2) Synthesis and regulation of membrane lipids; 3) Cellular responses to stress and activation of apoptosis; 4) Intracellular calcium homeostasis. Recent research has revealed that all these functions are tightly interlinked so that the understanding of each single function must be integrated with that of the others. Here we discuss some aspects of ER biology that have been uncovered by recent research which underline the strong connection between the many roles of this organelle.

A. Protein folding in the ER.
Efficient cell function requires that proteins that are secreted or exposed on the cell surface have correct spatial conformations. Cells must therefore block the transport of potentially toxic misfolded proteins. Thus, an important function of the ER is to assist the folding of newly-synthesized proteins, such that only properly folded proteins are exported towards the surface. Conversely, misfolded proteins are retained in the ER (quality control –QC), retrotaslocated to the cytosol and degraded by the proteasome (ER Associated Degradation – ERAD). One of the most important events during protein maturation is their oxidative folding. The ER lumen contains numerous enzymes involved >>>